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Bra006129 protein (Brassica rapa) - STRING interaction network
"Bra006129" - AT5G11920 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006129AT5G11920 (E=6e-227) AtcwINV6 | AtcwINV6 (6-&1-fructan exohydrolase); hydrolase, hydrolyzing O-glycosyl compounds / inulinase/ levanase (800 aa)    
Predicted Functional Partners:
Bra022839
AT2G31390 (E=3e-173) | pfkB-type carbohydrate kinase family protein (325 aa)
 
   
  0.715
Bra030634
AT1G06020 (E=1e-167) | pfkB-type carbohydrate kinase family protein (347 aa)
 
   
  0.714
Bra018248
AT2G31390 (E=3e-176) | pfkB-type carbohydrate kinase family protein (325 aa)
 
   
  0.713
Bra029158
AT5G51830 (E=2e-155) | pfkB-type carbohydrate kinase family protein (343 aa)
 
   
  0.712
Bra000704
AT4G10260 (E=8e-180) | pfkB-type carbohydrate kinase family protein (323 aa)
 
   
  0.712
Bra028279
AT5G51830 (E=3e-150) | pfkB-type carbohydrate kinase family protein (343 aa)
 
   
  0.711
Bra007044
AT3G54090 (E=2e-202) | pfkB-type carbohydrate kinase family protein (378 aa)
 
   
  0.711
Bra004168
AT1G66430 (E=2e-151) | pfkB-type carbohydrate kinase family protein (388 aa)
 
   
  0.711
Bra039025
AT4G29130 (E=3e-241) ATHXK1, GIN2, HXK1 | HXK1 (HEXOKINASE 1); ATP binding / fructokinase/ glucokinase/ hexokinase (500 aa)
         
  0.699
Bra036699
AT4G29130 (E=2e-237) ATHXK1, GIN2, HXK1 | HXK1 (HEXOKINASE 1); ATP binding / fructokinase/ glucokinase/ hexokinase (499 aa)
         
  0.699
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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