STRINGSTRING
Bra006136 protein (Brassica rapa) - STRING interaction network
"Bra006136" - AT5G11980 in Brassica rapa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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Textmining
[Homology]
Score
Bra006136AT5G11980 (E=2e-158) | conserved oligomeric Golgi complex component-related / COG complex component-related (596 aa)    
Predicted Functional Partners:
Bra023203
AT1G31780 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Conserved oligomeric complex COG6 (InterPro-IPR010490); Has 281 Blast hits to 279 proteins in 131 species- Archae - 0; Bacteria - 2; Metazoa - 132; Fungi - 106; Plants - 21; Viruses - 0; Other Eukaryotes - 20 (source- NCBI BLink). (681 aa)
     
  0.989
Bra015991
AT1G73430 (E=0.0) | sec34-like family protein (784 aa)
     
  0.986
Bra014690
AT4G01400 (E=9e-113) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- COG4 transport (InterPro-IPR013167), Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- pentatricopeptide (PPR) repeat-containing protein (TAIR-AT5G46100.1); Has 11639 Blast hits to 3936 proteins in 180 species- Archae - 0; Bacteria - 2; Metazoa - 206; Fungi - 141; Plants - 11004; Viruses - 0; Other Eukary [...] (276 aa)
     
  0.980
Bra000928
AT4G01400 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- COG4 transport (InterPro-IPR013167), Pentatricopeptide repeat (InterPro-IPR002885); BEST Arabidopsis thaliana protein match is- pentatricopeptide (PPR) repeat-containing protein (TAIR-AT5G46100.1); Has 11639 Blast hits to 3936 proteins in 180 species- Archae - 0; Bacteria - 2; Metazoa - 206; Fungi - 141; Plants - 11004; Viruses - 0; Other Eukaryote [...] (751 aa)
     
  0.980
Bra003542
AT1G79990 (E=0.0) | protein binding / structural molecule (1092 aa)
     
    0.971
Bra008625
AT5G16300 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Vps51/Vps67 (InterPro-IPR014812); Has 204 Blast hits to 183 proteins in 76 species- Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 34; Plants - 24; Viruses - 0; Other Eukaryotes - 19 (source- NCBI BLink). (1066 aa)
     
  0.967
Bra006348
AT5G16300 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Vps51/Vps67 (InterPro-IPR014812); Has 199 Blast hits to 182 proteins in 76 species- Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 34; Plants - 24; Viruses - 0; Other Eukaryotes - 19 (source- NCBI BLink). (742 aa)
     
  0.967
Bra004269
AT1G67930 (E=0.0) | Golgi transport complex protein-related (825 aa)
     
  0.939
Bra011848
AT1G62020 (E=1e-278) | coatomer protein complex, subunit alpha, putative (733 aa)
     
    0.925
Bra001616
AT3G15980 (E=1e-093) | coatomer protein complex, subunit beta 2 (beta prime), putative (728 aa)
     
    0.924
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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