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Bra006138 protein (Brassica rapa) - STRING interaction network
"Bra006138" - AT5G12040 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006138AT5G12040 (E=1e-168) | carbon-nitrogen hydrolase family protein (364 aa)    
Predicted Functional Partners:
Bra029067
AT5G53460 (E=0.0) GLT1 | GLT1; glutamate synthase (NADH) (2199 aa)
       
  0.968
Bra016948
AT2G41220 (E=0.0) GLU2 | GLU2 (GLUTAMATE SYNTHASE 2); glutamate synthase (ferredoxin) (1626 aa)
       
  0.961
Bra009483
AT5G04140 (E=0.0) GLU1, GLS1, GLUS, FD-GOGAT | GLU1 (GLUTAMATE SYNTHASE 1); glutamate synthase (ferredoxin) (1620 aa)
       
  0.961
Bra000220
AT2G41220 (E=0.0) GLU2 | GLU2 (GLUTAMATE SYNTHASE 2); glutamate synthase (ferredoxin) (1586 aa)
       
  0.961
Bra036142
AT5G49460 (E=0.0) ACLB-2 | ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2); ATP citrate synthase (729 aa)
   
 
  0.960
Bra030777
AT1G09430 (E=6e-237) ACLA-3 | ACLA-3; ATP citrate synthase (424 aa)
   
    0.943
Bra027127
AT1G60810 (E=3e-222) ACLA-2 | ACLA-2; ATP citrate synthase (423 aa)
   
    0.943
Bra018425
AT1G10670 (E=3e-221) ACLA-1 | ACLA-1; ATP citrate synthase (423 aa)
   
    0.943
Bra020639
AT5G49460 (E=0.0) ACLB-2 | ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2); ATP citrate synthase (608 aa)
   
 
  0.935
Bra011314
AT4G31990 (E=9e-249) ASP5, AAT3, ATAAT1 | ASP5 (ASPARTATE AMINOTRANSFERASE 5); L-aspartate-2-oxoglutarate aminotransferase (815 aa)
         
  0.933
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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