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Bra006147 protein (Brassica rapa) - STRING interaction network
"Bra006147" - AT5G12220 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006147AT5G12220 (E=1e-231) | las1-like family protein (613 aa)    
Predicted Functional Partners:
Bra008997
AT5G11010 (E=1e-171) | pre-mRNA cleavage complex-related (368 aa)
     
  0.991
Bra009187
AT5G27010 (E=0.0) | binding (878 aa)
     
  0.944
Bra030483
AT5G06350 (E=8e-033) | binding (684 aa)
     
  0.936
Bra029937
AT3G49180 (E=9e-178) RID3 | RID3 (ROOT INITIATION DEFECTIVE 3); nucleotide binding (437 aa)
     
  0.872
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
       
    0.855
Bra018002
AT3G49180 (E=5e-097) RID3 | RID3 (ROOT INITIATION DEFECTIVE 3); nucleotide binding (358 aa)
     
  0.850
Bra023524
AT5G15550 (E=4e-208) | transducin family protein / WD-40 repeat family protein ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (428 aa)
     
 
  0.770
Bra008691
AT5G15550 (E=7e-209) | transducin family protein / WD-40 repeat family protein ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (428 aa)
     
 
  0.770
Bra006306
AT5G15550 (E=2e-204) | transducin family protein / WD-40 repeat family protein ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (428 aa)
     
 
  0.770
Bra039889
AT5G15550 (E=1e-024) | transducin family protein / WD-40 repeat family protein (120 aa)
     
 
  0.730
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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