STRINGSTRING
Bra006148 protein (Brassica rapa) - STRING interaction network
"Bra006148" - AT5G12230 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006148AT5G12230 (E=2e-048) | unknown protein (221 aa)    
Predicted Functional Partners:
Bra031277
AT3G21350 (E=6e-109) | RNA polymerase transcriptional regulation mediator-related (255 aa)
       
 
  0.786
Bra024622
AT3G13900 (E=3e-139) | ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism (638 aa)
       
 
  0.664
Bra011967
AT2G28230 (E=7e-105) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- TATA-binding related factor (InterPro-IPR013921); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G09070.1); Has 43 Blast hits to 43 proteins in 21 species- Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 3 (source- NCBI BLink). (220 aa)
           
  0.418
Bra026749
AT1G15780 (E=3e-184) | unknown protein (1253 aa)
           
  0.406
Bra016651
AT1G15780 (E=3e-223) | unknown protein (1342 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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