STRINGSTRING
Bra006171 protein (Brassica rapa) - STRING interaction network
"Bra006171" - AT5G12950 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006171AT5G12950 (E=0.0) | catalytic (857 aa)    
Predicted Functional Partners:
Bra034141
AT3G10740 (E=0.0) ASD1, ARAF1, ARAF, ATASD1 | ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds / xylan 1,4-beta-xylosidase (674 aa)
 
          0.699
Bra002009
AT5G26120 (E=5e-145) ATASD2, ASD2 | ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds (621 aa)
 
          0.695
Bra001376
AT3G10740 (E=5e-149) ASD1, ARAF1, ARAF, ATASD1 | ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds / xylan 1,4-beta-xylosidase (549 aa)
 
          0.684
Bra009423
AT5G26120 (E=9e-098) ATASD2, ASD2 | ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds (237 aa)
 
          0.682
Bra032931
AT3G26380 (E=2e-299) | glycosyl hydrolase family protein 27 / alpha-galactosidase family protein / melibiase family protein (721 aa)
 
          0.503
Bra028661
AT5G08370 (E=2e-209) AtAGAL2 | AtAGAL2 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 2); alpha-galactosidase/ catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (394 aa)
 
          0.501
Bra028660
AT5G08380 (E=4e-211) AtAGAL1 | AtAGAL1 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 1); alpha-galactosidase/ catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (416 aa)
 
          0.500
Bra005988
AT5G08370 (E=7e-077) AtAGAL2 | AtAGAL2 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 2); alpha-galactosidase/ catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (548 aa)
 
          0.500
Bra007235
AT3G56310 (E=1e-236) | alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative (429 aa)
 
          0.499
Bra011514
AT4G34260 (E=0.0) FUC95A | FUC95A; 1,2-alpha-L-fucosidase (796 aa)
 
          0.494
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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