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Bra006173 protein (Brassica rapa) - STRING interaction network
"Bra006173" - AT5G12980 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bra006173AT5G12980 (E=6e-129) | rcd1-like cell differentiation protein, putative (300 aa)    
Predicted Functional Partners:
Bra037308
AT1G02080 (E=1e-193) | transcriptional regulator-related (1369 aa)
     
  0.977
Bra033222
AT1G02080 (E=0.0) | transcriptional regulator-related (2419 aa)
     
  0.977
Bra032664
AT1G02080 (E=0.0) | transcriptional regulator-related (2295 aa)
     
  0.977
Bra028531
AT1G02080 (E=0.0) | transcriptional regulator-related (2333 aa)
     
  0.977
Bra027361
AT1G02080 (E=1e-007) | transcriptional regulator-related (76 aa)
     
  0.977
Bra021787
AT1G02080 (E=1e-077) | transcriptional regulator-related (239 aa)
     
  0.977
Bra035152
AT1G80780 (E=6e-150) | CCR4-NOT transcription complex protein, putative (275 aa)
     
  0.972
Bra035002
AT3G44260 (E=2e-134) | CCR4-NOT transcription complex protein, putative (271 aa)
     
  0.972
Bra032421
AT1G06450 (E=2e-128) | CCR4-NOT transcription complex protein, putative (367 aa)
     
  0.972
Bra026093
AT1G15920 (E=2e-094) | CCR4-NOT transcription complex protein, putative (299 aa)
     
  0.972
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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