STRINGSTRING
Bra006177 protein (Brassica rapa) - STRING interaction network
"Bra006177" - AT2G14830 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006177AT2G14830 (E=2e-101) | unknown protein (352 aa)    
Predicted Functional Partners:
Bra016022
AT1G73030 (E=9e-093) VPS46.2 | VPS46.2 (203 aa)
     
 
  0.947
Bra008067
AT1G73030 (E=2e-053) VPS46.2 | VPS46.2 (174 aa)
     
 
  0.947
Bra003859
AT1G73030 (E=7e-093) VPS46.2 | VPS46.2 (203 aa)
     
 
  0.947
Bra018640
AT2G27600 (E=1e-227) SKD1, VPS4 | SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1); ATP binding / nucleoside-triphosphatase/ nucleotide binding (430 aa)
     
 
  0.859
Bra012009
AT2G27600 (E=2e-222) SKD1, VPS4 | SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1); ATP binding / nucleoside-triphosphatase/ nucleotide binding (433 aa)
     
 
  0.859
Bra007144
AT1G48350 (E=2e-024) | ribosomal protein L18 family protein (181 aa)
     
 
  0.859
Bra000503
AT2G27600 (E=1e-236) SKD1, VPS4 | SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1); ATP binding / nucleoside-triphosphatase/ nucleotide binding (433 aa)
     
 
  0.859
Bra022056
AT3G10640 (E=3e-025) VPS60.1 | VPS60.1 (85 aa)
     
 
  0.806
Bra009422
AT5G04850 (E=6e-110) VPS60.2 | VPS60.2 (240 aa)
     
 
  0.806
Bra005823
AT5G04850 (E=1e-110) VPS60.2 | VPS60.2 (238 aa)
     
 
  0.806
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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