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Bra006178 protein (Brassica rapa) - STRING interaction network
"Bra006178" - AT5G13080 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006178AT5G13080 (E=4e-067) WRKY75, ATWRKY75 | WRKY75; transcription factor (147 aa)    
Predicted Functional Partners:
Bra020136
AT5G20920 (E=1e-106) EIF2 BETA | EIF2 BETA; translation initiation factor (272 aa)
       
      0.749
Bra002341
AT5G20920 (E=1e-111) EIF2 BETA | EIF2 BETA; translation initiation factor (271 aa)
       
      0.749
Bra029578
AT5G20920 (E=4e-098) EIF2 BETA | EIF2 BETA; translation initiation factor (264 aa)
       
      0.616
Bra005662
AT5G01930 (E=8e-237) | (1-4)-beta-mannan endohydrolase, putative (634 aa)
       
      0.616
Bra039579
AT1G36730 (E=4e-177) | eukaryotic translation initiation factor 5, putative / eIF-5, putative (447 aa)
       
      0.612
Bra025391
AT1G77840 (E=1e-089) | eukaryotic translation initiation factor 5, putative / eIF-5, putative (411 aa)
       
      0.612
Bra015653
AT1G77840 (E=2e-107) | eukaryotic translation initiation factor 5, putative / eIF-5, putative (406 aa)
       
      0.612
Bra003666
AT1G77840 (E=1e-112) | eukaryotic translation initiation factor 5, putative / eIF-5, putative (417 aa)
       
      0.612
Bra033948
AT1G68320 (E=9e-127) MYB62, AtMYB62, BW62B, BW62C | MYB62 (myb domain protein 62); DNA binding / transcription factor (285 aa)
           
  0.476
Bra004297
AT1G68320 (E=1e-116) MYB62, AtMYB62, BW62B, BW62C | MYB62 (myb domain protein 62); DNA binding / transcription factor (284 aa)
           
  0.476
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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