STRINGSTRING
Bra006190 protein (Brassica rapa) - STRING interaction network
"Bra006190" - AT5G13220 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006190AT5G13220 (E=9e-068) JAZ10, TIFY9, JAS1 | JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10) (195 aa)    
Predicted Functional Partners:
Bra022254
AT3G17860 (E=1e-135) JAZ3, JAI3, TIFY6B | JAZ3 (JASMONATE-ZIM-DOMAIN PROTEIN 3) (335 aa)
     
  0.962
Bra021281
AT3G17860 (E=3e-154) JAZ3, JAI3, TIFY6B | JAZ3 (JASMONATE-ZIM-DOMAIN PROTEIN 3) (353 aa)
     
  0.962
Bra031065
AT1G74950 (E=7e-073) JAZ2, TIFY10B | TIFY10B (273 aa)
     
  0.959
Bra025713
AT1G19180 (E=8e-084) JAZ1, TIFY10A | JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding (254 aa)
     
  0.959
Bra016520
AT1G19180 (E=8e-087) JAZ1, TIFY10A | JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding (259 aa)
     
  0.959
Bra015880
AT1G74950 (E=4e-075) JAZ2, TIFY10B | TIFY10B (245 aa)
     
  0.959
Bra008172
AT1G19180 (E=8e-062) JAZ1, TIFY10A | JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding (240 aa)
     
  0.959
Bra003778
AT1G74950 (E=6e-055) JAZ2, TIFY10B | TIFY10B (222 aa)
     
  0.959
Bra020135
AT5G20900 (E=8e-050) JAZ12, TIFY3B | JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12) (221 aa)
     
  0.957
Bra002338
AT5G20900 (E=2e-040) JAZ12, TIFY3B | JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12) (201 aa)
     
  0.957
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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