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Bra006193 protein (Brassica rapa) - STRING interaction network
"Bra006193" - AT5G13300 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Bra006193AT5G13300 (E=0.0) SFC, VAN3, AGD3 | SFC (SCARFACE); ARF GTPase activator/ phosphoinositide binding (813 aa)    
Predicted Functional Partners:
Bra024773
AT4G05330 (E=7e-053) AGD13 | AGD13 (ARF-GAP domain 13); ARF GTPase activator/ zinc ion binding (290 aa)
     
  0.801
Bra013508
AT4G21160 (E=6e-075) ZAC | ZAC; ARF GTPase activator/ phospholipid binding (393 aa)
     
  0.801
Bra028525
AT5G42080 (E=0.0) ADL1, ADL1A, AG68, DRP1A, RSW9 | ADL1 (ARABIDOPSIS DYNAMIN-LIKE PROTEIN); GTP binding / GTPase/ protein binding (610 aa)
       
  0.795
Bra026910
AT2G37550 (E=1e-058) ASP1, AGD7 | AGD7; ARF GTPase activator/ DNA binding / zinc ion binding (181 aa)
       
  0.754
Bra014626
AT2G48020 (E=6e-036) | sugar transporter, putative (141 aa)
     
  0.732
Bra030681
AT1G07420 (E=2e-155) ATSMO2, SMO2-1 | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1); 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase/ C-4 methylsterol oxidase (517 aa)
       
  0.717
Bra034627
AT4G34450 (E=9e-301) | coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative ; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (902 aa)
     
  0.695
Bra011535
AT4G34450 (E=0.0) | coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative ; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (886 aa)
     
  0.695
Bra001970
AT4G34450 (E=0.0) | coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative ; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins (887 aa)
     
  0.695
Bra040041
AT3G07940 (E=2e-163) | zinc finger and C2 domain protein, putative (335 aa)
     
0.682
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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