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Bra006196 protein (Brassica rapa) - STRING interaction network
"Bra006196" - AT5G13370 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006196AT5G13370 (E=5e-289) | auxin-responsive GH3 family protein (607 aa)    
Predicted Functional Partners:
Bra005541
AT2G32950 (E=0.0) COP1, ATCOP1, DET340, FUS1, EMB168 | COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1); protein binding / ubiquitin-protein ligase (669 aa)
     
      0.471
Bra016086
AT1G72090 (E=4e-279) | radical SAM domain-containing protein / TRAM domain-containing protein (609 aa)
           
  0.455
Bra035031
AT1G78360 (E=2e-106) ATGSTU21 | ATGSTU21 (GLUTATHIONE S-TRANSFERASE TAU 21); glutathione transferase (220 aa)
       
 
  0.425
Bra036700
AT2G19830 (E=7e-082) SNF7.2, VPS32 | SNF7.2 (212 aa)
           
  0.412
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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