STRINGSTRING
Bra006204 protein (Brassica rapa) - STRING interaction network
"Bra006204" - AT5G13500 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006204AT5G13500 (E=2e-193) | unknown protein (354 aa)    
Predicted Functional Partners:
Bra040023
AT3G07680 (E=1e-116) | emp24/gp25L/p24 family protein (208 aa)
           
  0.406
Bra033513
AT5G20660 (E=0.0) | 24 kDa vacuolar protein, putative (911 aa)
           
  0.406
Bra031347
AT3G22290 (E=1e-181) | unknown protein (350 aa)
           
  0.406
Bra029668
AT3G07680 (E=3e-116) | emp24/gp25L/p24 family protein (208 aa)
           
  0.406
Bra008515
AT4G00240 (E=0.0) PLDBETA2 | PLDBETA2; phospholipase D (1450 aa)
           
  0.406
Bra001862
AT3G22290 (E=1e-195) | unknown protein (353 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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