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Bra006207 protein (Brassica rapa) - STRING interaction network
"Bra006207" - AT3G55620 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006207AT3G55620 (E=9e-102) emb1624 | emb1624 (embryo defective 1624); ribosome binding / translation initiation factor ; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis (394 aa)    
Predicted Functional Partners:
Bra033552
AT4G38360 (E=4e-068) | unknown protein (540 aa)
   
 
  0.976
Bra036932
AT1G43860 (E=7e-181) | transcription factor (357 aa)
   
 
  0.976
Bra032193
AT1G43860 (E=2e-182) | transcription factor (365 aa)
   
 
  0.976
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
     
 
  0.963
Bra034775
AT1G50920 (E=1e-059) | GTP-binding protein-related (447 aa)
   
 
  0.955
Bra038067
AT4G15770 (E=6e-098) | RNA binding / protein binding ; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (187 aa)
     
 
  0.954
Bra033510
AT4G15770 (E=1e-097) | RNA binding / protein binding ; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (187 aa)
     
 
  0.954
Bra012765
AT4G15770 (E=1e-099) | RNA binding / protein binding ; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (187 aa)
     
 
  0.954
Bra024770
AT1G25260 (E=3e-109) | acidic ribosomal protein P0-related (229 aa)
   
 
  0.954
Bra012490
AT1G25260 (E=7e-111) | acidic ribosomal protein P0-related (229 aa)
   
 
  0.954
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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