STRINGSTRING
Bra006208 protein (Brassica rapa) - STRING interaction network
"Bra006208" - AT5G13630 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006208AT5G13630 (E=0.0) GUN5, CCH, CHLH, CCH1 | GUN5 (GENOMES UNCOUPLED 5); magnesium chelatase (1382 aa)    
Predicted Functional Partners:
Bra018619
AT1G08520 (E=0.0) PDE166, CHLD | CHLD; ATP binding / magnesium chelatase/ nucleoside-triphosphatase/ nucleotide binding ; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX (756 aa)
 
 
  0.990
Bra013314
AT4G18480 (E=3e-187) CHLI1, CH42, CH-42, CHL11, CHLI-1 | CHLI1; ATPase/ magnesium chelatase ; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX (423 aa)
 
 
  0.985
Bra012595
AT4G18480 (E=9e-191) CHLI1, CH42, CH-42, CHL11, CHLI-1 | CHLI1; ATPase/ magnesium chelatase ; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX (423 aa)
 
 
  0.985
Bra019192
AT4G25080 (E=8e-069) CHLM | CHLM (magnesium-protoporphyrin IX methyltransferase); magnesium protoporphyrin IX methyltransferase (135 aa)
 
 
  0.984
Bra011481
AT4G33950 (E=3e-191) OST1, SNRK2-6, SRK2E, SNRK2.6, P44 | OST1 (OPEN STOMATA 1); calcium-dependent protein serine/threonine kinase/ kinase/ protein kinase (362 aa)
       
 
  0.937
Bra009876
AT5G26030 (E=2e-221) FC1, FC-I, ATFC-I | FC1 (ferrochelatase 1); ferrochelatase ; Catalyzes the ferrous insertion into protoporphyrin IX (459 aa)
   
 
  0.935
Bra007748
AT2G30390 (E=2e-216) FC2, FC-II, ATFC-II | FC2 (FERROCHELATASE 2); ferrochelatase ; Catalyzes the ferrous insertion into protoporphyrin IX (495 aa)
   
 
  0.929
Bra033317
AT4G01690 (E=1e-256) PPOX, HEMG1, PPO1 | PPOX; protoporphyrinogen oxidase (536 aa)
   
 
  0.907
Bra008772
AT5G14220 (E=3e-195) HEMG2, MEE61, PPO2 | HEMG2; electron carrier/ oxidoreductase/ protoporphyrinogen oxidase (521 aa)
   
 
  0.906
Bra007284
AT3G56940 (E=4e-212) CRD1, CHL27, ACSF | CRD1 (COPPER RESPONSE DEFECT 1); DNA binding / magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase (837 aa)
 
   
  0.866
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (10%) [HD]