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Bra006213 protein (Brassica rapa) - STRING interaction network
"Bra006213" - AT5G13750 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006213AT5G13750 (E=1e-232) ZIFL1 | ZIFL1 (ZINC INDUCED FACILITATOR-like 1); tetracycline-hydrogen antiporter (481 aa)    
Predicted Functional Partners:
Bra036635
AT1G63010 (E=0.0) | SPX (SYG1/Pho81/XPR1) domain-containing protein (702 aa)
           
  0.508
Bra034426
AT4G22990 (E=2e-220) | SPX (SYG1/Pho81/XPR1) domain-containing protein (676 aa)
           
  0.508
Bra027004
AT1G63010 (E=0.0) | SPX (SYG1/Pho81/XPR1) domain-containing protein (697 aa)
           
  0.508
Bra014869
AT4G11810 (E=0.0) | SPX (SYG1/Pho81/XPR1) domain-containing protein (697 aa)
           
  0.508
Bra013668
AT4G22990 (E=0.0) | SPX (SYG1/Pho81/XPR1) domain-containing protein (700 aa)
           
  0.508
Bra031242
AT3G20910 (E=4e-112) NF-YA9 | NF-YA9 (NUCLEAR FACTOR Y, SUBUNIT A9); specific transcriptional repressor/ transcription factor (295 aa)
           
  0.410
Bra030820
AT1G56010 (E=3e-142) NAC1, ANAC022 | NAC1; transcription factor (321 aa)
           
  0.410
Bra006165
AT5G12840 (E=3e-082) HAP2A, EMB2220, ATHAP2A, NF-YA1 | NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1); transcription factor (254 aa)
           
  0.410
Bra001806
AT3G20910 (E=1e-092) NF-YA9 | NF-YA9 (NUCLEAR FACTOR Y, SUBUNIT A9); specific transcriptional repressor/ transcription factor (308 aa)
           
  0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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