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Bra006218 protein (Brassica rapa) - STRING interaction network
"Bra006218" - AT3G12560 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006218AT3G12560 (E=2e-161) TRFL9, ATTBP2 | TRFL9 (TRF-LIKE 9); DNA bending/ DNA binding / telomeric DNA binding (612 aa)    
Predicted Functional Partners:
Bra040510
AT5G15020 (E=0.0) SNL2 | SNL2 (SIN3-LIKE 2) (1345 aa)
       
 
  0.628
Bra008588
AT5G16850 (E=0.0) ATTERT | ATTERT (TELOMERASE REVERSE TRANSCRIPTASE); telomerase/ telomeric template RNA reverse transcriptase (1165 aa)
           
  0.452
Bra040179
AT4G17750 (E=3e-173) HSF1, HSFA1A, ATHSF1, ATHSFA1A | HSF1 (HEAT SHOCK FACTOR 1); DNA binding / protein binding / transcription factor (432 aa)
       
 
  0.446
Bra009183
AT5G06310 (E=4e-215) AtPOT1b | AtPOT1b (protection of telomeres 1b); DNA binding (454 aa)
           
  0.410
Bra038372
AT4G09680 (E=0.0) | unknown protein (1236 aa)
           
  0.406
Bra037045
AT4G32730 (E=3e-186) PC-MYB1, MYB3R-1, ATMYB3R-1, ATMYB3R1, MYB3R1 | PC-MYB1; DNA binding / transcription coactivator/ transcription factor (896 aa)
           
  0.406
Bra034531
AT4G32730 (E=1e-171) PC-MYB1, MYB3R-1, ATMYB3R-1, ATMYB3R1 | PC-MYB1; DNA binding / transcription coactivator/ transcription factor (919 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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