STRINGSTRING
Bra006226 protein (Brassica rapa) - STRING interaction network
"Bra006226" - AT5G13960 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
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[Homology]
Score
Bra006226AT5G13960 (E=1e-230) SUVH4, KYP, SDG33 | SUVH4 (SU(VAR)3-9 HOMOLOG 4); double-stranded methylated DNA binding / histone methyltransferase(H3-K9 specific) / methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding (598 aa)    
Predicted Functional Partners:
Bra039939
AT5G49160 (E=0.0) MET1, MET2, METI, DDM2, DMT01, DMT1 | MET1 (METHYLTRANSFERASE 1); methyltransferase (1528 aa)
   
  0.630
Bra030191
AT5G49160 (E=0.0) MET1, MET2, METI, DDM2, DMT01, DMT1 | MET1 (METHYLTRANSFERASE 1); methyltransferase (1520 aa)
   
  0.630
Bra024340
AT1G69770 (E=3e-209) CMT3 | CMT3 (chromomethylase 3); DNA (cytosine-5-)-methyltransferase (805 aa)
   
  0.630
Bra019857
AT1G80740 (E=2e-085) CMT1, DMT4 | CMT1 (CHROMOMETHYLASE 1); DNA binding / chromatin binding (712 aa)
   
  0.630
Bra013370
AT4G19020 (E=0.0) CMT2 | CMT2 (chromomethylase 2); DNA binding / chromatin binding (1141 aa)
   
  0.630
Bra010026
AT5G49160 (E=0.0) MET1, MET2, METI, DDM2, DMT01, DMT1 | MET1 (METHYLTRANSFERASE 1); methyltransferase (1032 aa)
   
  0.630
Bra009843
AT5G25480 (E=1e-121) DNMT2 | DNMT2 (DNA METHYLTRANSFERASE-2); DNA binding (375 aa)
   
  0.630
Bra029717
AT3G23890 (E=1e-178) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (718 aa)
     
      0.601
Bra011071
AT3G23890 (E=0.0) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1412 aa)
     
      0.601
Bra034009
AT1G67270 (E=2e-159) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- DDT superfamily (InterPro-IPR018501), DDT subgroup (InterPro-IPR018500), Cell division cycle-associated protein (InterPro-IPR018866); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G67780.1); Has 297 Blast hits to 296 proteins in 63 species- Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 30; Plants - 98; Viruses - 0; Other Eukaryotes - 39 (source- NCBI BLink). (522 aa)
     
        0.563
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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