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Bra006227 protein (Brassica rapa) - STRING interaction network
"Bra006227" - AT5G13980 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006227AT5G13980 (E=0.0) | glycosyl hydrolase family 38 protein (1020 aa)    
Predicted Functional Partners:
Bra007235
AT3G56310 (E=1e-236) | alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative (429 aa)
       
 
  0.836
Bra028661
AT5G08370 (E=2e-209) AtAGAL2 | AtAGAL2 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 2); alpha-galactosidase/ catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (394 aa)
       
 
  0.790
Bra034423
AT3G56310 (E=2e-026) | alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative (149 aa)
       
 
  0.746
Bra032931
AT3G26380 (E=2e-299) | glycosyl hydrolase family protein 27 / alpha-galactosidase family protein / melibiase family protein (721 aa)
       
 
  0.746
Bra028660
AT5G08380 (E=4e-211) AtAGAL1 | AtAGAL1 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 1); alpha-galactosidase/ catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (416 aa)
       
 
  0.746
Bra005988
AT5G08370 (E=7e-077) AtAGAL2 | AtAGAL2 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 2); alpha-galactosidase/ catalytic/ hydrolase, hydrolyzing O-glycosyl compounds (548 aa)
       
 
  0.746
Bra033557
AT2G17290 (E=3e-250) CPK6, ATCDPK3 | CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6); ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase (895 aa)
         
  0.701
Bra013178
AT2G05320 (E=1e-201) | beta-1,2-N-acetylglucosaminyltransferase II (420 aa)
         
  0.676
Bra023496
AT5G14950 (E=0.0) GMII, ATGMII | GMII (GOLGI ALPHA-MANNOSIDASE II); alpha-mannosidase (1171 aa)
         
0.589
Bra006275
AT5G14950 (E=0.0) GMII, ATGMII | GMII (GOLGI ALPHA-MANNOSIDASE II); alpha-mannosidase (1171 aa)
         
0.589
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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