STRINGSTRING
Bra006233 protein (Brassica rapa) - STRING interaction network
"Bra006233" - AT5G14030 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006233AT5G14030 (E=5e-081) | translocon-associated protein beta (TRAPB) family protein (195 aa)    
Predicted Functional Partners:
Bra031166
AT2G21160 (E=3e-101) | translocon-associated protein alpha (TRAP alpha) family protein (258 aa)
     
 
  0.988
Bra030317
AT2G21160 (E=1e-078) | translocon-associated protein alpha (TRAP alpha) family protein (256 aa)
     
 
  0.988
Bra001982
AT2G16595 (E=3e-090) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- endomembrane system; EXPRESSED IN- 20 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- translocon-associated protein alpha (TRAP alpha) family protein (TAIR-AT2G21160.1); Has 191 Blast hits to 191 proteins in 71 species- Archae - 0; Bacteria - 0; Metazoa - 121; Fungi - 18; Plants - 38; Viruses - 0; Other Eukaryotes - 14 (source- NCBI BLink). (256 aa)
     
 
  0.988
Bra040326
AT3G60540 (E=1e-018) | sec61beta family protein (83 aa)
     
  0.888
Bra006659
AT5G60460 (E=4e-022) | sec61beta family protein (109 aa)
     
  0.888
Bra004887
AT3G60540 (E=1e-018) | sec61beta family protein (83 aa)
     
  0.888
Bra002478
AT5G60460 (E=8e-026) | sec61beta family protein (109 aa)
     
  0.888
Bra000368
AT2G45070 (E=5e-019) SEC61 BETA | SEC61 BETA; protein transporter (82 aa)
     
  0.888
Bra040958
AT1G52600 (E=1e-071) | signal peptidase, putative (153 aa)
     
 
    0.795
Bra030372
AT1G52600 (E=6e-099) | signal peptidase, putative (180 aa)
     
 
    0.795
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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