STRINGSTRING
Bra006237 protein (Brassica rapa) - STRING interaction network
"Bra006237" - AT5G14090 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006237AT5G14090 (E=8e-120) | unknown protein (346 aa)    
Predicted Functional Partners:
Bra034530
AT4G32720 (E=5e-177) AtLa1 | AtLa1 (Arabidopsis thaliana La protein 1); RNA binding (439 aa)
           
  0.552
Bra011375
AT4G32720 (E=5e-178) AtLa1 | AtLa1 (Arabidopsis thaliana La protein 1); RNA binding (446 aa)
           
  0.552
Bra026624
AT2G01940 (E=2e-183) SGR5, ATIDD15 | nucleic acid binding / transcription factor/ zinc ion binding (438 aa)
           
  0.505
Bra024841
AT2G01940 (E=4e-166) SGR5, ATIDD15 | nucleic acid binding / transcription factor/ zinc ion binding (444 aa)
           
  0.505
Bra017432
AT2G01940 (E=3e-178) SGR5, ATIDD15 | nucleic acid binding / transcription factor/ zinc ion binding (440 aa)
           
  0.505
Bra039356
AT3G12950 (E=9e-293) | catalytic (561 aa)
           
  0.406
Bra023002
AT2G35155 (E=2e-255) | catalytic (695 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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