STRINGSTRING
Bra006241 protein (Brassica rapa) - STRING interaction network
"Bra006241" - AT5G14150 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006241AT5G14150 (E=6e-167) | unknown protein (385 aa)    
Predicted Functional Partners:
Bra029058
AT5G53650 (E=5e-024) | unknown protein (73 aa)
           
  0.518
Bra022666
AT5G53650 (E=1e-029) | unknown protein (73 aa)
           
  0.518
Bra017116
AT2G38480 (E=2e-069) | integral membrane protein, putative (189 aa)
           
  0.518
Bra001421
AT3G11800 (E=6e-110) | unknown protein (245 aa)
           
  0.518
Bra020752
AT3G06390 (E=3e-067) | integral membrane family protein (205 aa)
           
  0.502
Bra002007
AT3G44150 (E=4e-116) | unknown protein (239 aa)
           
  0.493
Bra002007.1-P
AT3G44150 (E=4e-116) | unknown protein (239 aa)
           
  0.493
Bra012777
AT4G15610 (E=3e-052) | integral membrane family protein (193 aa)
           
  0.483
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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