STRINGSTRING
Bra006242 protein (Brassica rapa) - STRING interaction network
"Bra006242" - AT5G14170 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006242AT5G14170 (E=8e-202) CHC1 | CHC1 (503 aa)    
Predicted Functional Partners:
Bra037459
AT5G48820 (E=7e-058) KRP3, ICK6 | ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE); cyclin binding / cyclin-dependent protein kinase inhibitor (207 aa)
       
      0.998
Bra034614
AT2G27960 (E=4e-040) CKS1, CKS1AT | CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1); cyclin-dependent protein kinase/ protein binding ; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function (88 aa)
       
      0.998
Bra022223
AT3G17590 (E=1e-117) BSH, CHE1 | BSH (BUSHY GROWTH); chromatin binding / protein binding (236 aa)
     
  0.989
Bra009612
AT5G02110 (E=1e-107) CYCD7;1, CYCD7 | CYCD7;1 (CYCLIN D7;1); cyclin-dependent protein kinase (340 aa)
       
    0.984
Bra005708
AT5G02110 (E=3e-120) CYCD7;1, CYCD7 | CYCD7;1 (CYCLIN D7;1); cyclin-dependent protein kinase (343 aa)
       
    0.984
Bra036159
AT5G48820 (E=3e-061) KRP3, ICK6 | ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE); cyclin binding / cyclin-dependent protein kinase inhibitor (192 aa)
       
      0.973
Bra000456
AT2G47630 (E=2e-170) | esterase/lipase/thioesterase family protein (840 aa)
     
  0.971
Bra021864
AT2G33610 (E=5e-189) ATSWI3B, CHB2 | ATSWI3B (SWITCH SUBUNIT 3); DNA binding (459 aa)
     
  0.971
Bra017943
AT1G21700 (E=1e-185) ATSWI3C, CHB4 | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C); DNA binding (617 aa)
     
  0.971
Bra016409
AT1G21700 (E=0.0) ATSWI3C, CHB4 | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C); DNA binding (793 aa)
     
  0.971
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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