STRINGSTRING
Bra006245 protein (Brassica rapa) - STRING interaction network
"Bra006245" - AT5G14240 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006245AT5G14240 (E=5e-100) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Thioredoxin fold (InterPro-IPR012335), Phosducin (InterPro-IPR001200), Thioredoxin-like fold (InterPro-IPR012336); Has 750 Blast hits to 750 proteins in 282 species- Archae - 0; Bacteria - 2; Metazoa - 486; Fungi - 126; Plants - 51; Viruses - 0; Other Eukaryotes - 85 (source- NCBI BLink). (256 aa)    
Predicted Functional Partners:
Bra038252
AT3G20050 (E=8e-300) ATTCP-1 | ATTCP-1; ATP binding / protein binding / unfolded protein binding ; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis (761 aa)
       
  0.959
Bra035820
AT3G20050 (E=7e-295) ATTCP-1 | ATTCP-1; ATP binding / protein binding / unfolded protein binding ; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis (556 aa)
       
  0.959
Bra028262
AT3G20050 (E=4e-039) ATTCP-1 | ATTCP-1; ATP binding / protein binding / unfolded protein binding (248 aa)
       
  0.959
Bra001773
AT3G20050 (E=4e-290) ATTCP-1 | ATTCP-1; ATP binding / protein binding / unfolded protein binding ; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis (546 aa)
       
  0.959
Bra006584
AT5G20890 (E=2e-288) | chaperonin, putative ; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis (748 aa)
       
  0.956
Bra020134
AT5G20890 (E=1e-276) | chaperonin, putative ; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis (507 aa)
       
  0.955
Bra002337
AT5G20890 (E=3e-290) | chaperonin, putative ; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis (527 aa)
       
  0.955
Bra022292
AT3G18190 (E=4e-274) | chaperonin, putative ; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis (533 aa)
       
  0.942
Bra021300
AT3G18190 (E=3e-283) | chaperonin, putative ; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis (531 aa)
       
  0.942
Bra000254
AT3G18190 (E=4e-018) | chaperonin, putative (240 aa)
       
  0.942
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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