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Bra006253 protein (Brassica rapa) - STRING interaction network
"Bra006253" - AT5G14420 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006253AT5G14420 (E=1e-191) RGLG2 | RGLG2 (RING domain Ligase2); ubiquitin-protein ligase (471 aa)    
Predicted Functional Partners:
Bra031146
AT2G20880 (E=6e-072) | AP2 domain-containing transcription factor, putative (311 aa)
       
 
  0.793
Bra007932
AT1G70660 (E=5e-080) MMZ2, UEV1B | MMZ2 (MMS ZWEI HOMOLOGE 2); protein binding / ubiquitin-protein ligase (159 aa)
           
  0.483
Bra022964
AT2G34040 (E=1e-281) | apoptosis inhibitory 5 (API5) family protein (551 aa)
           
  0.467
Bra030592
AT1G04850 (E=9e-180) | ubiquitin-associated (UBA)/TS-N domain-containing protein (414 aa)
           
  0.465
Bra022321
AT3G18420 (E=3e-116) | tetratricopeptide repeat (TPR)-containing protein (246 aa)
           
  0.465
Bra032859
AT1G27970 (E=3e-066) NTF2B | NTF2B (NUCLEAR TRANSPORT FACTOR 2B); Ran GTPase binding / protein transporter (127 aa)
           
  0.463
Bra030069
AT1G27970 (E=4e-066) NTF2B | NTF2B (NUCLEAR TRANSPORT FACTOR 2B); Ran GTPase binding / protein transporter (123 aa)
           
  0.463
Bra026809
AT1G14720 (E=2e-165) XTR2, EXGT-A2, ATXTH28 | XTR2 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2); hydrolase, acting on glycosyl bonds / xyloglucan-xyloglucosyl transferase ; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (328 aa)
           
  0.463
Bra026630
AT2G01850 (E=4e-166) EXGT-A3, XTH27, ATXTH27 | EXGT-A3; hydrolase, acting on glycosyl bonds / xyloglucan-xyloglucosyl transferase ; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues (333 aa)
           
  0.463
Bra010953
AT1G27310 (E=4e-065) NTF2A | NTF2A (NUCLEAR TRANSPORT FACTOR 2A); Ran GTPase binding / protein transporter (122 aa)
           
  0.463
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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