STRINGSTRING
Bra006256 protein (Brassica rapa) - STRING interaction network
"Bra006256" - AT5G14480 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006256AT5G14480 (E=8e-218) | glycosyl transferase family 17 protein (388 aa)    
Predicted Functional Partners:
Bra013178
AT2G05320 (E=1e-201) | beta-1,2-N-acetylglucosaminyltransferase II (420 aa)
         
  0.903
Bra032719
AT4G13600 (E=3e-029) | EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 12 growth stages; CONTAINS InterPro DOMAIN/s- X8 (InterPro-IPR012946); BEST Arabidopsis thaliana protein match is- E13L3 (GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 3); callose binding / polysaccharide binding (TAIR-AT5G08000.1); Has 804 Blast hits to 768 proteins in 66 species- Archae - 0; Bacteria - 9; Metazoa - 8; Fungi - 36; Plants - 728; Viruses - 0; Other Eukaryotes - 23 (source- NCBI BLink). (207 aa)
           
  0.461
Bra029134
AT5G52190 (E=5e-080) | sugar isomerase (SIS) domain-containing protein (196 aa)
           
  0.457
Bra025187
AT3G26140 (E=8e-240) | glycosyl hydrolase family 5 protein / cellulase family protein (513 aa)
           
  0.457
Bra024150
AT4G29260 (E=8e-124) | acid phosphatase class B family protein (261 aa)
           
  0.457
Bra021004
AT4G18540 (E=7e-088) | unknown protein (571 aa)
           
  0.457
Bra014816
AT3G54440 (E=0.0) | glycoside hydrolase family 2 protein (1104 aa)
           
  0.457
Bra013321
AT4G18540 (E=3e-080) | unknown protein (549 aa)
           
  0.457
Bra012588
AT4G18540 (E=4e-112) | unknown protein (547 aa)
           
  0.457
Bra010333
AT4G29260 (E=1e-111) | acid phosphatase class B family protein (265 aa)
           
  0.457
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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