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Bra006258 protein (Brassica rapa) - STRING interaction network
"Bra006258" - AT5G14500 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006258AT5G14500 (E=2e-164) | aldose 1-epimerase family protein (317 aa)    
Predicted Functional Partners:
Bra019214
AT4G24620 (E=0.0) PGI1, PGI | PGI1 (PHOSPHOGLUCOSE ISOMERASE 1); glucose-6-phosphate isomerase (613 aa)
         
  0.880
Bra013819
AT4G24620 (E=1e-314) PGI1, PGI | PGI1 (PHOSPHOGLUCOSE ISOMERASE 1); glucose-6-phosphate isomerase (616 aa)
         
  0.880
Bra027452
AT5G42740 (E=6e-182) | glucose-6-phosphate isomerase, cytosolic (PGIC) (542 aa)
         
  0.873
Bra028278
AT5G51820 (E=0.0) PGM, ATPGMP, PGM1, STF1 | PGM (PHOSPHOGLUCOMUTASE); phosphoglucomutase (628 aa)
     
 
    0.871
Bra024568
AT1G23190 (E=0.0) | phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative (583 aa)
     
 
    0.869
Bra016357
AT1G23190 (E=0.0) | phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative (583 aa)
     
 
    0.869
Bra027179
AT3G16260 (E=0.0) TRZ4 | TRZ4 (TRNASE Z 4); 3’-tRNA processing endoribonuclease/ catalytic (925 aa)
       
      0.622
Bra018950
AT1G52160 (E=0.0) TRZ3 | TRZ3 (TRNASE Z 3); 3’-tRNA processing endoribonuclease/ catalytic (813 aa)
       
      0.622
Bra013203
AT2G04530 (E=1e-165) CPZ, TRZ2 | CPZ; 3’-tRNA processing endoribonuclease (352 aa)
       
      0.614
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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