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Bra006262 protein (Brassica rapa) - STRING interaction network
"Bra006262" - AT5G14590 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006262AT5G14590 (E=3e-250) | isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative (483 aa)    
Predicted Functional Partners:
Bra020810
AT4G35260 (E=5e-184) IDH1 | IDH1 (ISOCITRATE DEHYDROGENASE 1); isocitrate dehydrogenase (NAD+)/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor (363 aa)
   
  0.979
Bra011599
AT4G35260 (E=2e-188) IDH1 | IDH1 (ISOCITRATE DEHYDROGENASE 1); isocitrate dehydrogenase (NAD+)/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor (367 aa)
   
  0.979
Bra019845
AT2G05710 (E=0.0) | aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative ; Catalyzes the isomerization of citrate to isocitrate via cis-aconitate (991 aa)
   
  0.971
Bra011642
AT4G35830 (E=0.0) | aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO) ; Catalyzes the isomerization of citrate to isocitrate via cis-aconitate (898 aa)
   
  0.971
Bra010508
AT4G35830 (E=0.0) | aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO) ; Catalyzes the isomerization of citrate to isocitrate via cis-aconitate (898 aa)
   
  0.971
Bra028843
AT5G03290 (E=2e-187) | isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative (595 aa)
   
0.971
Bra009537
AT5G03290 (E=1e-203) | isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative (371 aa)
   
0.967
Bra005736
AT5G03290 (E=1e-189) | isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative (370 aa)
   
0.967
Bra029067
AT5G53460 (E=0.0) GLT1 | GLT1; glutamate synthase (NADH) (2199 aa)
       
  0.967
Bra016948
AT2G41220 (E=0.0) GLU2 | GLU2 (GLUTAMATE SYNTHASE 2); glutamate synthase (ferredoxin) (1626 aa)
       
  0.964
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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