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Bra006272 protein (Brassica rapa) - STRING interaction network
"Bra006272" - AT5G14910 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006272AT5G14910 (E=1e-072) | heavy-metal-associated domain-containing protein (182 aa)    
Predicted Functional Partners:
Bra007055
AT3G54210 (E=1e-078) | ribosomal protein L17 family protein (208 aa)
     
        0.631
Bra003176
AT3G54210 (E=2e-093) | ribosomal protein L17 family protein (208 aa)
     
        0.631
Bra023302
AT1G32990 (E=3e-087) PRPL11 | PRPL11 (PLASTID RIBOSOMAL PROTEIN L11); structural constituent of ribosome (219 aa)
     
        0.622
Bra000953
AT4G01310 (E=2e-127) | ribosomal protein L5 family protein (264 aa)
     
        0.606
Bra027273
AT3G15190 (E=1e-056) | chloroplast 30S ribosomal protein S20, putative (205 aa)
     
        0.595
Bra021593
AT3G15190 (E=1e-054) | chloroplast 30S ribosomal protein S20, putative (199 aa)
     
        0.595
Bra001587
AT3G15190 (E=9e-058) | chloroplast 30S ribosomal protein S20, putative (201 aa)
     
        0.595
Bra000285
AT2G43030 (E=4e-114) | ribosomal protein L3 family protein (266 aa)
     
        0.583
Bra040773
AT1G29070 (E=3e-048) | ribosomal protein L34 family protein (165 aa)
     
        0.579
Bra010852
AT1G29070 (E=5e-044) | ribosomal protein L34 family protein (161 aa)
     
        0.579
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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