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Bra006275 protein (Brassica rapa) - STRING interaction network
"Bra006275" - AT5G14950 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006275AT5G14950 (E=0.0) GMII, ATGMII | GMII (GOLGI ALPHA-MANNOSIDASE II); alpha-mannosidase (1171 aa)    
Predicted Functional Partners:
Bra013178
AT2G05320 (E=1e-201) | beta-1,2-N-acetylglucosaminyltransferase II (420 aa)
         
  0.943
Bra033557
AT2G17290 (E=3e-250) CPK6, ATCDPK3 | CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6); ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase (895 aa)
         
  0.747
Bra028976
AT5G55500 (E=5e-255) ATXYLT, XYLT | XYLT (ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE); xylosyltransferase (529 aa)
     
 
  0.658
Bra037183
AT5G13980 (E=0.0) | glycosyl hydrolase family 38 protein (1151 aa)
         
0.589
Bra006227
AT5G13980 (E=0.0) | glycosyl hydrolase family 38 protein (1020 aa)
         
0.589
Bra025225
AT3G26720 (E=0.0) | glycosyl hydrolase family 38 protein (1021 aa)
         
0.588
Bra032351
AT1G30000 (E=7e-297) | glycoside hydrolase family 47 protein (617 aa)
     
 
  0.544
Bra010804
AT1G30000 (E=3e-303) | glycoside hydrolase family 47 protein (606 aa)
     
 
  0.544
Bra035984
AT5G43710 (E=1e-125) | glycoside hydrolase family 47 protein (584 aa)
           
  0.483
Bra034423
AT3G56310 (E=2e-026) | alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative (149 aa)
       
 
  0.480
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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