STRINGSTRING
Bra006277 protein (Brassica rapa) - STRING interaction network
"Bra006277" - AT5G15070 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006277AT5G15070 (E=0.0) | acid phosphatase/ oxidoreductase/ transition metal ion binding (1055 aa)    
Predicted Functional Partners:
Bra027458
AT5G42810 (E=3e-198) ATIPK1 | ATIPK1 (Inositol-pentakisphosphate 2-kinase 1); inositol pentakisphosphate 2-kinase/ inositol tetrakisphosphate 2-kinase (443 aa)
         
  0.902
Bra016388
AT1G59312 (E=1e-169) | ATP binding / inositol pentakisphosphate 2-kinase (583 aa)
         
  0.902
Bra039273
AT2G46580 (E=3e-100) | pyridoxine 5’-phosphate oxidase-related (198 aa)
       
      0.861
Bra025314
AT5G61760 (E=5e-127) ATIPK2BETA, IPK2B, IPK2BETA | ATIPK2BETA; inositol or phosphatidylinositol kinase/ inositol trisphosphate 6-kinase (281 aa)
         
  0.715
Bra032027
AT3G02950 (E=5e-108) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 18 plant structures; EXPRESSED DURING- 9 growth stages; CONTAINS InterPro DOMAIN/s- Tho complex subunit 7 (InterPro-IPR018018), Tho complex subunit 7/Mft1p (InterPro-IPR008501); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G16790.1); Has 2049 Blast hits to 1787 proteins in 271 species- Archae - 31; Bacteria - 158; Metazoa - 1041; Fungi - 168; Plants - 75; Viruses - 26; Other Eukaryotes - 550 (source- NCBI [...] (236 aa)
       
      0.583
Bra040508
AT3G01300 (E=3e-213) | protein kinase, putative (485 aa)
           
  0.543
Bra033055
AT3G28730 (E=9e-172) ATHMG, SSRP1, NFD | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP); transcription factor (623 aa)
       
      0.507
Bra025350
AT3G28730 (E=2e-239) ATHMG, SSRP1, NFD | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP); transcription factor (658 aa)
       
      0.507
Bra026641
AT2G01690 (E=0.0) | binding (734 aa)
     
      0.491
Bra024862
AT2G01690 (E=6e-311) | binding (726 aa)
     
      0.491
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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