STRINGSTRING
Bra006285 protein (Brassica rapa) - STRING interaction network
"Bra006285" - AT5G15150 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006285AT5G15150 (E=8e-115) ATHB-3, HAT7, ATHB3 | ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3); DNA binding / sequence-specific DNA binding / transcription factor (283 aa)    
Predicted Functional Partners:
Bra032478
AT1G05230 (E=0.0) HDG2 | HDG2 (HOMEODOMAIN GLABROUS 2); DNA binding / transcription factor (719 aa)
           
  0.472
Bra029527
AT4G04890 (E=0.0) PDF2 | PDF2 (PROTODERMAL FACTOR 2); DNA binding / transcription factor (745 aa)
           
  0.472
Bra020872
AT4G21750 (E=0.0) ATML1 | ATML1 (MERISTEM LAYER 1); DNA binding / sequence-specific DNA binding / transcription factor (748 aa)
           
  0.472
Bra015401
AT1G05230 (E=0.0) HDG2 | HDG2 (HOMEODOMAIN GLABROUS 2); DNA binding / transcription factor (720 aa)
           
  0.472
Bra040484
AT2G46790 (E=2e-152) APRR9, PRR9, TL1 | APRR9 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9); protein binding / transcription regulator/ two-component response regulator (824 aa)
       
 
  0.456
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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