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Bra006287 protein (Brassica rapa) - STRING interaction network
"Bra006287" - AT5G15170 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006287AT5G15170 (E=0.0) | tyrosyl-DNA phosphodiesterase-related (612 aa)    
Predicted Functional Partners:
Bra003000
AT5G54260 (E=0.0) MRE11, ATMRE11 | MRE11 (meiotic recombination 11); endonuclease/ exonuclease/ hydrolase/ manganese ion binding / protein serine/threonine phosphatase (709 aa)
     
 
  0.950
Bra035567
AT5G55300 (E=3e-290) TOP1ALPHA, TOP1 | TOP1ALPHA (DNA TOPOISOMERASE I ALPHA); DNA topoisomerase type I (1225 aa)
       
 
  0.944
Bra002917
AT5G55310 (E=0.0) TOP1BETA, TOP1 | TOP1BETA (DNA TOPOISOMERASE 1 BETA); DNA topoisomerase type I (906 aa)
       
 
  0.944
Bra018061
AT3G48425 (E=6e-195) | endonuclease/exonuclease/phosphatase family protein (358 aa)
     
 
  0.944
Bra016932
AT2G41460 (E=2e-153) ARP | ARP; DNA-(apurinic or apyrimidinic site) lyase (482 aa)
     
 
  0.944
Bra011657
AT4G36050 (E=1e-207) | endonuclease/exonuclease/phosphatase family protein (558 aa)
     
 
  0.944
Bra009639
AT5G01310 (E=2e-312) | basic helix-loop-helix (bHLH) family protein (680 aa)
     
 
  0.829
Bra027296
AT3G14890 (E=3e-166) | phosphoesterase (602 aa)
     
 
  0.802
Bra001572
AT3G14890 (E=7e-126) | phosphoesterase (460 aa)
     
 
  0.802
Bra029467
AT4G30870 (E=1e-182) ATMUS81, MUS81 | MUS81 (MMS AND UV SENSITIVE 81); endonuclease/ nucleic acid binding (627 aa)
     
 
  0.770
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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