STRINGSTRING
Bra006288 protein (Brassica rapa) - STRING interaction network
"Bra006288" - AT5G15190 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006288AT5G15190 (E=1e-028) | unknown protein (115 aa)    
Predicted Functional Partners:
Bra006287
AT5G15170 (E=0.0) | tyrosyl-DNA phosphodiesterase-related (612 aa)
           
  0.502
Bra023509
AT5G15180 (E=6e-139) | peroxidase, putative (330 aa)
           
  0.453
Bra023508
AT5G15160 (E=8e-035) | bHLH family protein (93 aa)
           
  0.406
Bra008716
AT5G15160 (E=2e-035) | bHLH family protein (94 aa)
           
  0.406
Bra006286
AT5G15160 (E=3e-036) | bHLH family protein (94 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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