STRINGSTRING
Bra006294 protein (Brassica rapa) - STRING interaction network
"Bra006294" - AT5G15270 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006294AT5G15270 (E=8e-225) | KH domain-containing protein (600 aa)    
Predicted Functional Partners:
Bra016955
AT2G41020 (E=1e-190) | WW domain-containing protein (799 aa)
         
  0.923
Bra001208
AT3G66652 (E=1e-128) | fip1 motif-containing protein (1267 aa)
       
    0.919
Bra003512
AT2G47610 (E=2e-108) | 60S ribosomal protein L7A (RPL7aA) (405 aa)
         
  0.872
Bra037150
AT5G66750 (E=0.0) DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase (1199 aa)
       
  0.755
Bra023895
AT3G21215 (E=8e-108) | RNA-binding protein, putative (306 aa)
     
  0.755
Bra016954
AT2G41060 (E=5e-128) | RNA recognition motif (RRM)-containing protein (440 aa)
     
  0.746
Bra007277
AT3G56860 (E=5e-150) UBA2A | UBP1 interacting protein 2a (UBA2a) (449 aa)
     
  0.741
Bra007458
AT2G43410 (E=3e-192) FPA | FPA; RNA binding (748 aa)
     
  0.739
Bra004761
AT2G43410 (E=0.0) FPA | FPA; RNA binding (926 aa)
     
  0.739
Bra038389
AT4G09040 (E=5e-080) | RNA recognition motif (RRM)-containing protein (285 aa)
     
  0.733
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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