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Bra006297 protein (Brassica rapa) - STRING interaction network
"Bra006297" - AT5G15350 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006297AT5G15350 (E=1e-065) | plastocyanin-like domain-containing protein (170 aa)    
Predicted Functional Partners:
Bra039196
AT2G23360 (E=6e-149) | transport protein-related (798 aa)
           
  0.505
Bra016009
AT1G73240 (E=9e-132) | unknown protein (507 aa)
           
  0.489
Bra032170
AT2G23360 (E=1e-280) | transport protein-related (710 aa)
           
  0.485
Bra015663
AT1G77580 (E=7e-221) | myosin heavy chain-related (758 aa)
           
  0.479
Bra034012
AT1G67230 (E=0.0) LINC1 | LINC1 (LITTLE NUCLEI1) (1115 aa)
           
  0.406
Bra010762
AT4G14340 (E=2e-201) CKI1, CKL11 | CKI1 (CASEIN KINASE I); kinase/ protein serine/threonine kinase (452 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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