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Bra006305 protein (Brassica rapa) - STRING interaction network
"Bra006305" - AT5G15530 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006305AT5G15530 (E=2e-078) BCCP2, CAC1-B | BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2); biotin binding (254 aa)    
Predicted Functional Partners:
Bra031705
AT5G35360 (E=1e-273) CAC2 | CAC2; acetyl-CoA carboxylase/ biotin carboxylase (724 aa)
 
  0.997
Bra036771
AT1G36160 (E=0.0) ACC1, AT-ACC1, EMB22, GK, PAS3 | ACC1 (ACETYL-COENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase (2233 aa)
   
  0.995
Bra018702
AT1G36180 (E=0.0) ACC2 | ACC2 (ACETYL-COA CARBOXYLASE 2); acetyl-CoA carboxylase (2310 aa)
   
  0.995
Bra019953
AT5G35360 (E=5e-250) CAC2 | CAC2; acetyl-CoA carboxylase/ biotin carboxylase (501 aa)
 
  0.989
Bra036142
AT5G49460 (E=0.0) ACLB-2 | ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2); ATP citrate synthase (729 aa)
   
 
  0.979
Bra005141
AT2G38040 (E=1e-303) CAC3 | CAC3; acetyl-CoA carboxylase (767 aa)
 
 
  0.976
Bra000037
AT2G38040 (E=0.0) CAC3 | CAC3; acetyl-CoA carboxylase (766 aa)
 
 
  0.976
Bra021619
AT2G30200 (E=4e-168) | [acyl-carrier-protein] S-malonyltransferase/ binding / catalytic/ transferase (367 aa)
   
  0.976
Bra018329
AT2G30200 (E=2e-162) | [acyl-carrier-protein] S-malonyltransferase/ binding / catalytic/ transferase (384 aa)
   
  0.976
Bra027031
AT1G62640 (E=7e-219) KAS III | KAS III (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III); 3-oxoacyl-[acyl-carrier-protein] synthase/ catalytic/ transferase, transferring acyl groups other than amino-acyl groups (404 aa)
   
 
  0.969
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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