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Bra006306 protein (Brassica rapa) - STRING interaction network
"Bra006306" - AT5G15550 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006306AT5G15550 (E=2e-204) | transducin family protein / WD-40 repeat family protein ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (428 aa)    
Predicted Functional Partners:
Bra004892
AT2G40360 (E=0.0) | transducin family protein / WD-40 repeat family protein ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (1259 aa)
     
  0.999
Bra000371
AT2G40360 (E=0.0) | transducin family protein / WD-40 repeat family protein ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (738 aa)
     
  0.999
Bra006260
AT5G14520 (E=9e-275) | pescadillo-related ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (592 aa)
     
  0.999
Bra027242
AT3G15470 (E=8e-259) | WD-40 repeat family protein (1054 aa)
     
 
  0.998
Bra021111
AT1G52930 (E=2e-141) | brix domain-containing protein (321 aa)
     
 
  0.998
Bra001595
AT3G15460 (E=7e-155) | brix domain-containing protein (316 aa)
     
 
  0.998
Bra028783
AT5G04600 (E=5e-092) | RNA recognition motif (RRM)-containing protein (219 aa)
     
 
  0.997
Bra009440
AT5G04600 (E=2e-088) | RNA recognition motif (RRM)-containing protein (223 aa)
     
 
  0.997
Bra024770
AT1G25260 (E=3e-109) | acidic ribosomal protein P0-related (229 aa)
     
  0.997
Bra012490
AT1G25260 (E=7e-111) | acidic ribosomal protein P0-related (229 aa)
     
  0.997
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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