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Bra006313 protein (Brassica rapa) - STRING interaction network
"Bra006313" - AT5G15630 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006313AT5G15630 (E=2e-244) COBL4, IRX6 | IRX6 (849 aa)    
Predicted Functional Partners:
Bra006407
AT5G17420 (E=0.0) IRX3, CESA7, ATCESA7, MUR10 | IRX3 (IRREGULAR XYLEM 3); cellulose synthase (1034 aa)
     
   
  0.527
Bra002963
AT5G54690 (E=1e-277) GAUT12, LGT6, IRX8 | GAUT12 (GALACTURONOSYLTRANSFERASE 12); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (535 aa)
     
   
  0.526
Bra033714
AT5G44030 (E=0.0) CESA4, IRX5, NWS2 | CESA4 (CELLULOSE SYNTHASE A4); cellulose synthase/ transferase, transferring glycosyl groups (1052 aa)
     
   
  0.516
Bra012578
AT4G18780 (E=0.0) CESA8, IRX1, ATCESA8, LEW2 | IRX1 (IRREGULAR XYLEM 1); cellulose synthase/ transferase, transferring glycosyl groups (985 aa)
     
   
  0.499
Bra005218
AT2G37090 (E=2e-177) IRX9 | IRX9 (IRREGULAR XYLEM 9); transferase, transferring glycosyl groups / xylosyltransferase (347 aa)
     
   
  0.487
Bra005140
AT5G58910 (E=1e-221) LAC16 | LAC16 (laccase 16); laccase (576 aa)
     
   
  0.445
Bra030051
AT1G27440 (E=2e-221) GUT2, IRX10, ATGUT1 | GUT2; catalytic/ glucuronoxylan glucuronosyltransferase (412 aa)
     
   
  0.425
Bra028848
AT5G03170 (E=4e-106) FLA11 | FLA11 (243 aa)
     
   
  0.420
Bra005740
AT5G03170 (E=1e-092) FLA11 | FLA11 (243 aa)
     
   
  0.420
Bra006656
AT5G60490 (E=5e-069) FLA12 | FLA12 (286 aa)
     
   
  0.419
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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