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Bra006315 protein (Brassica rapa) - STRING interaction network
"Bra006315" - AT5G15650 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006315AT5G15650 (E=4e-208) RGP2, ATRGP2 | RGP2 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 2); transferase, transferring hexosyl groups (363 aa)    
Predicted Functional Partners:
Bra032409
AT1G30620 (E=2e-229) HSR8, MUR4, UXE1 | MUR4 (MURUS 4); UDP-arabinose 4-epimerase/ catalytic (419 aa)
     
 
    0.902
Bra020917
AT4G20460 (E=1e-223) | NAD-dependent epimerase/dehydratase family protein (411 aa)
     
 
    0.902
Bra039165
AT3G02230 (E=5e-206) RGP1, ATRGP1 | RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1); cellulose synthase (UDP-forming) (357 aa)
   
 
0.629
Bra021473
AT3G02230 (E=7e-212) RGP1, ATRGP1 | RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1); cellulose synthase (UDP-forming) (357 aa)
   
 
0.629
Bra001037
AT3G02230 (E=2e-211) RGP1, ATRGP1 | RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1); cellulose synthase (UDP-forming) (357 aa)
   
 
0.629
Bra005387
AT1G30620 (E=4e-210) HSR8, MUR4, UXE1 | MUR4 (MURUS 4); UDP-arabinose 4-epimerase/ catalytic (454 aa)
     
 
    0.619
Bra035262
AT4G10960 (E=7e-194) UGE5 | UGE5 (UDP-D-glucose/UDP-D-galactose 4-epimerase 5); UDP-glucose 4-epimerase/ protein dimerization (347 aa)
     
 
    0.587
Bra019257
AT4G23920 (E=4e-196) UGE2 | UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2); UDP-glucose 4-epimerase/ protein dimerization (348 aa)
     
 
    0.587
Bra016757
AT1G12780 (E=9e-199) UGE1 | UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1); UDP-glucose 4-epimerase/ protein dimerization (351 aa)
     
 
    0.587
Bra027732
AT1G64440 (E=4e-180) RHD1, REB1, UGE4 | RHD1 (ROOT HAIR DEFECTIVE 1); UDP-glucose 4-epimerase/ protein dimerization (343 aa)
     
 
  0.560
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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