STRINGSTRING
Bra006316 protein (Brassica rapa) - STRING interaction network
"Bra006316" - AT5G15680 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006316AT5G15680 (E=0.0) | binding (2152 aa)    
Predicted Functional Partners:
Bra033489
AT4G14350 (E=4e-241) | protein kinase family protein (1011 aa)
     
 
  0.809
Bra040471
AT5G09890 (E=4e-162) | protein kinase, putative (408 aa)
     
 
  0.804
Bra038998
AT2G19400 (E=4e-265) | protein kinase, putative (528 aa)
     
 
  0.804
Bra036723
AT2G19400 (E=2e-255) | protein kinase, putative (475 aa)
     
 
  0.804
Bra036473
AT2G20470 (E=2e-286) | kinase (1205 aa)
     
 
  0.804
Bra033407
AT1G03920 (E=8e-018) | protein kinase, putative (193 aa)
     
 
  0.804
Bra033404
AT1G03920 (E=6e-083) | protein kinase, putative (288 aa)
     
 
  0.804
Bra032411
AT1G30640 (E=7e-300) | protein kinase, putative (562 aa)
     
 
  0.804
Bra031468
AT5G09890 (E=1e-270) | protein kinase, putative (523 aa)
     
 
  0.804
Bra031123
AT2G20470 (E=1e-236) | kinase (540 aa)
     
 
  0.804
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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