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Bra006317 protein (Brassica rapa) - STRING interaction network
"Bra006317" - AT5G15710 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006317AT5G15710 (E=1e-223) | F-box family protein (435 aa)    
Predicted Functional Partners:
Bra039168
AT3G02290 (E=2e-109) | zinc finger (C3HC4-type RING finger) family protein (292 aa)
           
  0.541
Bra008675
AT5G15790 (E=9e-098) | zinc finger (C3HC4-type RING finger) family protein (238 aa)
           
  0.510
Bra022151
AT5G47690 (E=0.0) | binding (1779 aa)
           
  0.501
Bra024922
AT5G47690 (E=0.0) | binding (1625 aa)
           
  0.483
Bra008279
AT1G76810 (E=0.0) | eukaryotic translation initiation factor 2 family protein / eIF-2 family protein (1268 aa)
           
  0.478
Bra016430
AT1G76720 (E=8e-282) | GTP binding / GTPase/ translation initiation factor (1035 aa)
           
  0.448
Bra000494
AT2G28390 (E=1e-272) | SAND family protein (581 aa)
     
   
  0.430
Bra008680
AT5G15730 (E=1e-216) | serine/threonine protein kinase, putative (446 aa)
           
  0.408
Bra026443
AT4G26410 (E=5e-113) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 25 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Uncharacterised conserved protein UCP022280 (InterPro-IPR016803); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT2G45060.1); Has 47 Blast hits to 47 proteins in 12 species- Archae - 3; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 40; Viruses - 1; Other Eukaryotes - 2 (source- NCBI BLink). (261 aa)
           
  0.406
Bra010282
AT4G30550 (E=7e-126) | glutamine amidotransferase class-I domain-containing protein (255 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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