STRINGSTRING
Bra006318 protein (Brassica rapa) - STRING interaction network
"Bra006318" - AT5G15720 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006318AT5G15720 (E=2e-173) GLIP7 | GLIP7; carboxylesterase/ lipase (366 aa)    
Predicted Functional Partners:
Bra012866
AT3G51150 (E=0.0) | kinesin motor family protein (1123 aa)
           
  0.501
Bra004451
AT2G47500 (E=3e-239) | ATP binding / microtubule motor (938 aa)
           
  0.483
Bra037000
AT4G33590 (E=1e-221) | unknown protein (447 aa)
     
   
  0.466
Bra034575
AT4G33600 (E=4e-225) | unknown protein (463 aa)
     
   
  0.466
Bra034574
AT4G33590 (E=2e-238) | unknown protein (466 aa)
     
   
  0.466
Bra029610
AT3G06890 (E=3e-018) | unknown protein (125 aa)
           
  0.457
Bra001224
AT3G06890 (E=4e-020) | unknown protein (126 aa)
           
  0.457
Bra011800
AT4G38000 (E=8e-078) | Dof-type zinc finger domain-containing protein (242 aa)
     
   
  0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (7%) [HD]