STRINGSTRING
Bra006320 protein (Brassica rapa) - STRING interaction network
"Bra006320" - AT5G15750 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006320AT5G15750 (E=3e-093) | RNA-binding S4 domain-containing protein (182 aa)    
Predicted Functional Partners:
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
   
  0.999
Bra040978
ATCG00740 (E=1e-124) RPOA | RNA polymerase alpha subunit (475 aa)
   
  0.999
Bra027789
AT1G63780 (E=8e-145) IMP4 | IMP4 (294 aa)
     
  0.999
Bra039013
AT2G19720 (E=4e-068) rps15ab | rps15ab (ribosomal protein S15A B); structural constituent of ribosome (129 aa)
   
  0.999
Bra035862
AT5G63070 (E=5e-061) | 40S ribosomal protein S15, putative (158 aa)
   
  0.999
Bra035439
AT1G58380 (E=7e-124) XW6 | XW6; structural constituent of ribosome (280 aa)
   
  0.999
Bra034077
AT5G02960 (E=2e-077) | 40S ribosomal protein S23 (RPS23B) (258 aa)
   
  0.999
Bra015299
AT1G04270 (E=1e-082) RPS15 | RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15); structural constituent of ribosome (152 aa)
   
  0.999
Bra032101
AT1G72370 (E=4e-124) P40, AP40, RP40, RPSAA | P40; structural constituent of ribosome ; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits (292 aa)
   
  0.999
Bra001300
AT5G02960 (E=5e-078) | 40S ribosomal protein S23 (RPS23B) (142 aa)
   
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (10%) [HD]