STRINGSTRING
Bra006332 protein (Brassica rapa) - STRING interaction network
"Bra006332" - AT5G15880 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006332AT5G15880 (E=3e-142) | unknown protein (345 aa)    
Predicted Functional Partners:
Bra008689
AT5G15580 (E=0.0) LNG1 | LNG1 (LONGIFOLIA1) (896 aa)
           
  0.499
Bra001034
AT3G02170 (E=6e-289) LNG2 | LNG2 (LONGIFOLIA2) (857 aa)
           
  0.477
Bra016266
AT1G69780 (E=8e-145) ATHB13 | ATHB13; DNA binding / sequence-specific DNA binding / transcription factor (288 aa)
           
  0.416
Bra005225
AT2G36985 (E=2e-025) ROT4, DVL16 | ROT4 (ROTUNDIFOLIA4) (53 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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