STRINGSTRING
Bra006333 protein (Brassica rapa) - STRING interaction network
"Bra006333" - AT5G15920 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006333AT5G15920 (E=0.0) | structural maintenance of chromosomes (SMC) family protein (MSS2) (1049 aa)    
Predicted Functional Partners:
Bra027275
AT3G15150 (E=1e-079) | zinc ion binding (289 aa)
       
  0.994
Bra028687
AT5G07660 (E=0.0) | structural maintenance of chromosomes (SMC) family protein (1033 aa)
     
0.990
Bra012956
AT5G61460 (E=0.0) MIM, ATRAD18 | MIM (hypersensitive to MMS, irradiation and MMC); ATP binding (1053 aa)
     
0.990
Bra036757
AT1G34770 (E=1e-111) | MAGE-8 antigen-related (236 aa)
       
  0.988
Bra030454
AT1G51130 (E=7e-161) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Nse4 (InterPro-IPR014854); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G20760.1); Has 200 Blast hits to 198 proteins in 89 species- Archae - 0; Bacteria - 0; Metazoa - 63; Fungi - 88; Plants - 37; Viruses - 0; Other Eukaryotes - 12 (source- NCBI BLink). (387 aa)
     
  0.978
Bra018895
AT1G51130 (E=6e-159) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Nse4 (InterPro-IPR014854); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G20760.1); Has 200 Blast hits to 198 proteins in 89 species- Archae - 0; Bacteria - 0; Metazoa - 63; Fungi - 88; Plants - 37; Viruses - 0; Other Eukaryotes - 12 (source- NCBI BLink). (397 aa)
     
  0.978
Bra014647
AT3G57060 (E=0.0) | binding ; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases (1361 aa)
     
  0.969
Bra007297
AT3G57060 (E=0.0) | binding ; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases (1345 aa)
     
  0.969
Bra028134
AT5G37630 (E=0.0) EMB2656 | EMB2656 (EMBRYO DEFECTIVE 2656); binding (1028 aa)
     
  0.968
Bra029717
AT3G23890 (E=1e-178) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (718 aa)
     
 
  0.967
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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