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Bra006334 protein (Brassica rapa) - STRING interaction network
"Bra006334" - AT5G15950 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006334AT5G15950 (E=7e-106) | adenosylmethionine decarboxylase family protein (302 aa)    
Predicted Functional Partners:
Bra024620
AT1G70310 (E=8e-158) SPDS2 | SPDS2 (spermidine synthase 2); spermidine synthase (344 aa)
     
 
  0.768
Bra022631
AT5G53120 (E=2e-184) SPDS3, SPMS | SPDS3 (SPERMIDINE SYNTHASE 3); spermidine synthase/ spermine synthase (355 aa)
     
 
  0.768
Bra020045
AT5G19530 (E=6e-184) ACL5 | ACL5 (ACAULIS 5); spermine synthase/ thermospermine synthase (332 aa)
     
 
  0.768
Bra016329
AT1G23820 (E=3e-168) SPDS1 | SPDS1 (spermidine synthase 1); spermidine synthase (333 aa)
     
 
  0.768
Bra012389
AT1G23820 (E=2e-128) SPDS1 | SPDS1 (spermidine synthase 1); spermidine synthase (303 aa)
     
 
  0.768
Bra012388
AT1G23820 (E=4e-028) SPDS1 | SPDS1 (spermidine synthase 1); spermidine synthase (95 aa)
     
 
  0.768
Bra003082
AT5G53120 (E=9e-184) SPDS3, SPMS | SPDS3 (SPERMIDINE SYNTHASE 3); spermidine synthase/ spermine synthase (361 aa)
     
 
  0.768
Bra002244
AT5G19530 (E=2e-185) ACL5 | ACL5 (ACAULIS 5); spermine synthase/ thermospermine synthase (332 aa)
     
 
  0.768
Bra037878
AT4G08790 (E=3e-136) | nitrilase, putative (326 aa)
       
      0.613
Bra002666
AT5G58240 (E=3e-072) | bis(5’-adenosyl)-triphosphatase, putative (190 aa)
       
      0.613
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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