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Bra006349 protein (Brassica rapa) - STRING interaction network
"Bra006349" - AT4G01270 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006349AT4G01270 (E=5e-022) | zinc finger (C3HC4-type RING finger) family protein (184 aa)    
Predicted Functional Partners:
Bra031571
AT1G07370 (E=5e-142) PCNA1 | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor/ protein binding ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (263 aa)
       
 
  0.934
Bra018377
AT1G07370 (E=2e-144) PCNA1 | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor/ protein binding ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (263 aa)
       
 
  0.934
Bra031225
AT2G22010 (E=0.0) RKP | RKP (Related to KPC1); protein binding / zinc ion binding (1274 aa)
         
  0.805
Bra028860
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1443 aa)
     
 
    0.798
Bra010737
AT4G38600 (E=0.0) KAK, UPL3 | KAK (KAKTUS); ubiquitin-protein ligase (1888 aa)
     
 
    0.798
Bra005748
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1349 aa)
     
 
    0.798
Bra025107
AT5G44740 (E=1e-202) POLH | POLH (Y-FAMILT DNA POLYMERASE H); DNA-directed DNA polymerase (691 aa)
     
      0.622
Bra037647
AT3G60120 (E=1e-172) BGLU27 | BGLU27 (BETA GLUCOSIDASE 27); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (803 aa)
       
      0.613
Bra040197
AT3G04380 (E=2e-191) SUVR4, SDG31 | SUVR4; histone-lysine N-methyltransferase (942 aa)
       
 
  0.518
Bra001104
AT3G04380 (E=5e-194) SUVR4, SDG31 | SUVR4; histone-lysine N-methyltransferase (756 aa)
       
 
  0.518
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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