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Bra006354 protein (Brassica rapa) - STRING interaction network
"Bra006354" - AT5G16440 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006354AT5G16440 (E=3e-125) IPP1 | IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1); isopentenyl-diphosphate delta-isomerase (261 aa)    
Predicted Functional Partners:
Bra014828
AT3G54250 (E=1e-227) | mevalonate diphosphate decarboxylase, putative (419 aa)
   
 
  0.834
Bra007059
AT3G54250 (E=4e-227) | mevalonate diphosphate decarboxylase, putative (419 aa)
   
 
  0.834
Bra024917
AT5G47770 (E=1e-147) FPS1 | FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1); dimethylallyltranstransferase/ geranyltranstransferase (372 aa)
   
 
  0.828
Bra022156
AT5G47770 (E=6e-190) FPS1 | FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1); dimethylallyltranstransferase/ geranyltranstransferase (342 aa)
   
 
  0.828
Bra032779
AT5G24150 (E=8e-187) SQP1, SQE5 | SQP1; squalene monooxygenase (439 aa)
     
   
  0.819
Bra031120
AT5G24150 (E=4e-201) SQP1, SQE5 | SQP1; squalene monooxygenase (528 aa)
     
   
  0.819
Bra030198
AT2G22830 (E=4e-233) SQE2 | SQE2 (squalene epoxidase 2); FAD binding / oxidoreductase/ squalene monooxygenase (533 aa)
     
   
  0.819
Bra029393
AT5G24150 (E=9e-199) SQP1, SQE5 | SQP1; squalene monooxygenase (519 aa)
     
   
  0.819
Bra029392
AT5G24150 (E=9e-215) SQP1, SQE5 | SQP1; squalene monooxygenase (518 aa)
     
   
  0.819
Bra029391
AT5G24140 (E=2e-224) SQP2 | SQP2; FAD binding / oxidoreductase/ squalene monooxygenase (518 aa)
     
   
  0.819
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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