STRINGSTRING
Bra006356 protein (Brassica rapa) - STRING interaction network
"Bra006356" - AT5G16460 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006356AT5G16460 (E=7e-118) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Adipose-regulatory protein, Seipin (InterPro-IPR009617); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G29760.1); Has 150 Blast hits to 150 proteins in 45 species- Archae - 0; Bacteria - 0; Metazoa - 103; Fungi - 16; Plants - 29; Viruses - 0; Other Eukaryotes - 2 (source- NCBI BLink). (272 aa)    
Predicted Functional Partners:
Bra039180
AT3G02580 (E=2e-155) STE1, DWF7, BUL1 | STE1 (STEROL 1); C-5 sterol desaturase (276 aa)
       
 
  0.617
Bra021429
AT3G02580 (E=9e-156) STE1, DWF7, BUL1 | STE1 (STEROL 1); C-5 sterol desaturase (282 aa)
       
 
  0.617
Bra021428
AT3G02590 (E=6e-146) | delta 7-sterol-C5-desaturase, putative (278 aa)
       
 
  0.617
Bra001055
AT3G02580 (E=1e-056) STE1, DWF7, BUL1 | STE1 (STEROL 1); C-5 sterol desaturase (214 aa)
       
 
  0.617
Bra001054
AT3G02590 (E=4e-068) | delta 7-sterol-C5-desaturase, putative (219 aa)
       
 
  0.617
Bra001053
AT3G02580 (E=9e-151) STE1, DWF7, BUL1 | STE1 (STEROL 1); C-5 sterol desaturase (282 aa)
       
 
  0.617
Bra021364
AT3G03230 (E=1e-160) | esterase/lipase/thioesterase family protein (352 aa)
           
  0.573
Bra026330
AT4G27630 (E=5e-216) GTG2 | GTG2 (GPCR-TYPE G PROTEIN 2) (468 aa)
       
      0.517
Bra022501
AT1G64990 (E=2e-170) GTG1 | GTG1 (GPCR-TYPE G PROTEIN 1) (444 aa)
       
      0.517
Bra010399
AT4G27530 (E=1e-039) | unknown protein (127 aa)
           
  0.514
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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